This book constitutes the thoroughly refereed post-conference proceedings of the 16th International Conference on DNA Computing and Molecular Programming, DNA16, held in Hong Kong, China, in June 2010.
The 16 revised full papers presented were carefully selected during two rounds of reviewing and improvement from 59 submissions. The papers are well balanced between theoretical and experimental work and address all areas that relate to biomolecular computing, including demonstrations of biomolecular computing, theoretical models of biomolecular computing, biomolecular algorithms, computational processes in vitro and in vivo, analysis and theoretical models of laboratory techniques, biotechnological and other applications of DNA computing, DNA nanostructures, DNA devices such as DNA motors, DNA error evaluation and correction, in vitro evolution, molecular design, self-assembled systems, nucleic acid chemistry, and simulation tools.
Lecture Notes in Computer Science Commenced Publication in 1973 Founding and Former Series Editors: Gerhard Goos, Juris Hartmanis, and Jan van Leeuwen
Editorial Board David Hutchison Lancaster University, UK Takeo Kanade Carnegie Mellon University, Pittsburgh, PA, USA Josef Kittler University of Surrey, Guildford, UK Jon M. Kleinberg Cornell University, Ithaca, NY, USA Alfred Kobsa University of California, Irvine, CA, USA Friedemann Mattern ETH Zurich, Switzerland John C. Mitchell Stanford University, CA, USA Moni Naor Weizmann Institute of Science, Rehovot, Israel Oscar Nierstrasz University of Bern, Switzerland C. Pandu Rangan Indian Institute of Technology, Madras, India Bernhard Steffen TU Dortmund University, Germany Madhu Sudan Microsoft Research, Cambridge, MA, USA Demetri Terzopoulos University of California, Los Angeles, CA, USA Doug Tygar University of California, Berkeley, CA, USA Gerhard Weikum Max Planck Institute for Informatics, Saarbruecken, Germany
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Yasubumi Sakakibara Yongli Mi (Eds.)
DNA Computing and Molecular Programming 16th International Conference, DNA 16 Hong Kong, China, June 14-17, 2010 Revised Selected Papers
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Volume Editors Yasubumi Sakakibara Keio University, Department of Biosciences and Informatics 3-14-1 Hiyoshi, Kohoku-ku, Yokohama, 223-8522, Japan E-mail:
[email protected] Yongli Mi Hong Kong University of Science and Technology Department of Chemical and Biomolecular Engineering Clear Water Bay, Kowloon, Hong Kong, China E-mail:
[email protected]
ISSN 0302-9743 e-ISSN 1611-3349 ISBN 978-3-642-18304-1 e-ISBN 978-3-642-18305-8 DOI 10.1007/978-3-642-18305-8 Springer Heidelberg Dordrecht London New York Library of Congress Control Number: 2010942453 CR Subject Classification (1998): F.1, F.2.2, J.3, E.1, I.2 LNCS Sublibrary: SL 1 – Theoretical Computer Science and General Issues © Springer-Verlag Berlin Heidelberg 2011 This work is subject to copyright. All rights are reserved, whether the whole or part of the material is concerned, specifically the rights of translation, reprinting, re-use of illustrations, recitation, broadcasting, reproduction on microfilms or in any other way, and storage in data banks. Duplication of this publication or parts thereof is permitted only under the provisions of the German Copyright Law of September 9, 1965, in its current version, and permission for use must always be obtained from Springer. Violations are liable to prosecution under the German Copyright Law. The use of general descriptive names, registered names, trademarks, etc. in this publication does not imply, even in the absence of a specific