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This book constitutes the thoroughly refereed post-proceedings of the 9th International Conference on Implementation and Application of Automata, CIAA 2004, held in Kingston, Canada in July 2004. The 25 revised full papers and 14 revised poster papers presented together with 2 invited contributions have gone through two rounds of reviewing and improvement. The topics covered range from applications of automata in natural language and speech processing to protein sequencing and gene compression, and from state complexity and new algorithms for automata operations to applications of quantum finite automata.
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Lecture Notes in Computer Science Commenced Publication in 1973 Founding and Former Series Editors: Gerhard Goos, Juris Hartmanis, and Jan van Leeuwen Editorial Board David Hutchison Lancaster University, UK Takeo Kanade Carnegie Mellon University, Pittsburgh, PA, USA Josef Kittler University of Surrey, Guildford, UK Jon M. Kleinberg Cornell University, Ithaca, NY, USA Friedemann Mattern ETH Zurich, Switzerland John C. Mitchell Stanford University, CA, USA Moni Naor Weizmann Institute of Science, Rehovot, Israel Oscar Nierstrasz University of Bern, Switzerland C. Pandu Rangan Indian Institute of Technology, Madras, India Bernhard Steffen University of Dortmund, Germany Madhu Sudan Massachusetts Institute of Technology, MA, USA Demetri Terzopoulos New York University, NY, USA Doug Tygar University of California, Berkeley, CA, USA Moshe Y. Vardi Rice University, Houston, TX, USA Gerhard Weikum Max-Planck Institute of Computer Science, Saarbruecken, Germany 3317 This page intentionally left blank Michael Domaratzki Alexander Okhotin Kai Salomaa Sheng Yu (Eds.) Implementation and Application of Automata 9th International Conference, CIAA 2004 Kingston, Canada, July 22-24, 2004 Revised Selected Papers Springer eBook ISBN: Print ISBN: 3-540-30500-9 3-540-24318-6 ©2005 Springer Science + Business Media, Inc. Print ©2005 Springer-Verlag Berlin Heidelberg All rights reserved No part of this eBook may be reproduced or transmitted in any form or by any means, electronic, mechanical, recording, or otherwise, without written consent from the Publisher Created in the United States of America Visit Springer's eBookstore at: and the Springer Global Website Online at: http://ebooks.springerlink.com http://www.springeronline.com Preface This volume of Lecture Notes in Computer Science contains the revised versions of the papers presented at the 9th International Conference on Implementation and Application of Automata, CIAA 2004. Also included are the extended abstracts of the posters accepted to the conference. The conference was held at Queen’s University in Kingston, Ontario, Canada on July 22–24, 2004. As for its predecessors, the theme of CIAA 2004 was the implementation of automata and grammars of all types and their application in other fields. The topics of the papers presented at the conference range from applications of automata in natural language and speech processing to protein sequencing and gene compression, and from state complexity and new algorithms for automata operations to applications of quantum finite automata. The 25 regular papers and 14 poster papers were selected from 62 submissions to the conference. Each submitted paper was evaluated by at least three Program Committee members, with the help of external referees. Based on the referee reports, the paper “Substitutions, Trajectories and Noisy Channels” by L. Kari, S. Konstantinidis and P. Sosík was chosen as the winner of the CIAA 2004 Best Paper Award. The award is sponsored by the University of California at Santa Barbara. The authors of the papers presented here come from the following countries and regions: Austria, Canada, Czech Republi