Dna Repair And Replication


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ADVANCES IN PROTEIN CHEMISTRY Volume 69 DNA Repair and Replication This Page Intentionally Left Blank ADVANCES IN PROTEIN CHEMISTRY EDITED BY FREDERIC M. RICHARDS DAVID S. EISENBERG Department of Molecular Biophysics and Biochemistry, Yale University New Haven, Connecticut Department of Chemistry and Biochemistry Center for Genomics and Proteomics University of California, Los Angeles Los Angeles, California JOHN KURIYAN Department of Molecular and Cellular Biology University of California, Berkeley Berkeley, California VOLUME 69 DNA Repair and Replication EDITED BY Wei Yang Section Chief of Structure and Mechanism, Laboratory of Molecular Biology, NIDDK, NIH, Bethesda, Maryland Elsevier Academic Press 525 B Street, Suite 1900, San Diego, California 92101-4495, USA 84 Theobald’s Road, London WC1X 8RR, UK This book is printed on acid-free paper. Copyright ß 2004, Elsevier Inc. All Rights Reserved. Except chapter 5 Copyright ß U.S. Government No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopy, recording, or any information storage and retrieval system, without permission in writing from the Publisher. The appearance of the code at the bottom of the first page of a chapter in this book indicates the Publisher’s consent that copies of the chapter may be made for personal or internal use of specific clients. This consent is given on the condition, however, that the copier pay the stated per copy fee through the Copyright Clearance Center, Inc. (www.copyright.com), for copying beyond that permitted by Sections 107 or 108 of the U.S. Copyright Law. This consent does not extend to other kinds of copying, such as copying for general distribution, for advertising or promotional purposes, for creating new collective works, or for resale. Copy fees for pre-2004 chapters are as shown on the title pages. If no fee code appears on the title page, the copy fee is the same as for current chapters. 0065-3233/2004 $35.00 Permissions may be sought directly from Elsevier’s Science & Technology Rights Department in Oxford, UK: phone: (þ44) 1865 843830, fax: (þ44) 1865 853333, E-mail: [email protected] You may also complete your request on-line via the Elsevier homepage (http://elsevier.com), by selecting ‘‘Customer Support’’ and then ‘‘Obtaining Permissions.’’ For all information on all Academic Press publications visit our Web site at www.books.elsevier.com ISBN: 0-12-034269-3 PRINTED IN THE UNITED STATES OF AMERICA 04 05 06 07 08 9 8 7 6 5 4 3 2 1 CONTENTS PREFACE . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ix Base Excision Repair J. Christopher Fromme and Gregory L. Verdine I. II. III. IV. V. VI. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Types of Damage Repaired by BER . . . . . . . . . . . . . . . . . . . . . . DNA Glycosylases . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Downstream BER Enzymes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mammalian BER . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Roles of BER Enzymes in Other Processes . . . . . . . . . . . . . . . . . References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1 5 7 18 23 27 28 Nucleotide Excision Repair in E. Coli and Man Aziz Sancar and Joyce T. Reardon I. II. III. IV. V. VI. Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Damage Recog
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